PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33816
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 470aa    MW: 51945.3 Da    PI: 8.1706
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33816genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045114136123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+Cp+C+++F++ ++   H  ++
  Tp57577_TGAC_v2_mRNA33816 114 YECPICKTPFRSEDEVSEHVESC 136
                                99**************9998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1435032.09E-18173257IPR018997PUB domain
CDDcd092127.71E-20177261No hitNo description
SMARTSM005802.4E-18179246IPR018997PUB domain
PfamPF094093.0E-17181253IPR018997PUB domain
SuperFamilySSF542369.3E-12329442IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.907.6E-8357442No hitNo description
PROSITE profilePS500339.788358442IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDDVKDKFKG FMKKVTSSSS SSSGKFKGQG RVLGSSSSSS SSTPVNSIPT PRPSPSPSQN  60
PNPKPNPNPK PTSTIASNPT RIDKPRKTGD GFDPFDALVT SSQRSKNGYS LNVYECPICK  120
TPFRSEDEVS EHVESCLSNS NERGDNDEKF VSKSEAIVES DTELEICIGT YVSGNPSVGS  180
VDIVLKLLRN IVKEPENVKF RKIRLSNPKI KEAVADVNGG IELLSILGFE LREENGETWA  240
VMEVPTEEKI KLIKKAIVLL EPQLVQDPPK RDNLVSTASA EKVVEAEPAE PKKIDRQVKV  300
FFAVAESVAA KIELPDSFYK RSAEEVRREA ELRKKKFEES QLLIPKSLRE KQAKAAKKRY  360
TRTIIRIQFP DAAVLQGVFA PWEPTSALYE FVSSSIKEPN LEFELMHPVV VQRRVIPCFP  420
KAGQKAKTIE EEDLVPSALI KFKPLETDSV VFTGLKNELL EISEPLVNG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630914.10.0plant UBX domain protein
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLG7LAI20.0G7LAI2_MEDTR; Plant UBX domain protein
STRINGGLYMA08G04760.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89442529